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[1-100] [101-200] [201-300] [301-400] [401-500] [501-600] [601-700] [701-800] [801-900] [901-1000] [1001-1100] [1101-1200] [1201-1300] [1301-1400] [1401-1500] [1501-1600] [1601-1700] [1701-1800] [1801-1900] [1901-2000] [2001-2100] [2101-2200] [2201-2300] [2301-2400] [2401-2411]


18S rDNA from 40 beetle species

Data matrix used in Maddison, D.R., Baker, M.D., and Ober, K.A. In press.A preliminary phylogenetic analysis of 18S ribosomal DNA of carabid beetles (Coleoptera: Carabidae). Boll. Mus. reg. Sci. nat. Torino.

Sites 1901 through 2000

Calybe        TATCACTAGCATTTCGGTG-TTTAGTTGGTTTGTGGT----------------------------------------------GGGCGG-GAGTTTGTGG
Cymindis      ATTGACCTATACTCCGGTA-TTTGGTTTGGTGTGTA---GTG-----------------------------------------GGGCAG-AAGTTTGTGG
Amara         ATCACCATTCATTTCGGTG-TTTGGCTGGTTTGTGGT----------------------------G-----------------GTGCGG-GAGTTTGTGG
Agonum        GCTTGGGGGCATTTCGGTG-TTTCTCTAGTTTTGTTGTGTGGT----------------------------------------GGGTGG-GAGTTTGTGG
Discoderus    CATCACCTGCATTACGGTG-TATGGTTGCTGTGTGGT----------------------------------------------GGGCGG-GAGTTTGTGG
Chlaenius     ATCACTAGACATTTCGGTG-TTTTAGTTGGTGTGTG---GT------------------------------------------GGACAG-GAGTTTGTGG
Loxandrus     TTCATTCAACATTTCGGTG-TTTGTTTTGGTGTATGG--T-----------------------------G-------------GTATAG-GAGTTTGTGG
Pterostichus  ATTGCCGGCCATTTCGGTG-GTTGGTTGGTGTGTGGT----------------------------------------------GGGCGG-GAGTTTGTGG
Galerita      GGCAATAAATATTTCGGTA-TTTTTGTCATCCTTTATTTATTTGTCTTG-----GAATGTGTGGTG-----------------GGGCGG-AAGTTTGTGG
Pseudaptinus  GTTAAACTGCATTTCGGTG-TTTTTTACCCTCTTCTTTTATTCTATCTG---------GGATATGTTGTG-------------AGGCGG-AAGTTTGTGG
Pseudomorpha  GCTCTTTCGTCTTTGGGTG-GATGTTGTAGTATCTTTATTTCGGGTGCATGTTTGTTTATTTTGTAGTTGTGGTGCGTGTAGTGGGCGG-GAGTTTGTGG
Morion        TATATAATTCATCTTAACC-GGTGTTTTATTATTATGAAACGGTATATA-----GTGA-------------------------GGTCAG-GTGTTTGTGG
Psydrus       ----ACACGTTTTTGATCG-CTTCTGTGGTCATCTGCGTGCATGTCGG-----------TATTGT------------------TGGCCGAGATTTCGCGG
Diplous       TCACTCCGGTGTTCCTGTA-TGCGTAGCGCTGCGTATGTGTTCTC--------------------------------------AGTTCGAGTGTTCACAG
Patrobus      CTGCGTGGTCGTTTCGGCG-GCACCGTAGTCGCGCAGCGTTGCGCTGCTTGTGTGC---------------------------AGTACGAGTGTATACAG
Zolus         GGTCAGTGTAGCTCCGGCT-GTACTGTCGTACGCTGTGCGCGTTCGG------------------------------------GGCCGGGTGTGTTACGG
Sloaneana     AGTGTGTGCAGTTTCGGC--TGTATTGCATTATGCGGTACATGGTCG------------------------------------GTGCGG-GTGTGTACGG
Diplochaetus  TGTGTTGTGTATTTGCGTG-CATGCATTGTTACGGCAGTGTATGTTACGTGGTGCATTTTCATGCGGTGTACGTTCA------GTGCGA-GAGTTCACGG
Pericompsus   CGGTATCTGTTCTGCAGTA-TATCGTATACGGTGGGTGTTCG-----------------------------------------GTGCGG-GAGTTCACGG
Bembidion     TATCATCGTTTAGGCGGTG-TGCATTGCACTGGGTGCGTTCA-----------------------------------------GGGCGGGAGTCTCACGG
Asaphidion    TGTCATTGTCAAGGCAATG-CGCATTGCACTGGGTATGTGCA-----------------------------------------GTGCGG-GAGTTCACAG
Trechus       TTTGTCGTTGTGTATTGTC-ATTTTATGGCGGTCATGGCGCGGTGTACGTTT-------A-----------------------GGGCGG-AAGTTCACGG
Pasimachus    ACTTTAATTTGTTTTGGTG-TTATTGTTGTTTCTATTGTTAAATGAGTTGTTGTGAAACCTTGCCAGTGTATCCAATTCATTGGTCGAATGTATGTGTTG
Scarites      GTTCAAGAAACTTATCTTA-ATTGATTTGTTTTTTGGCTTTCCCATTATTT-------G------------------------GTCGGATGTTTGTGTGG
Clivina       TTTGTTAAGGGTT---ACG-CATGTTTCACTTACAATAGAGCGCGTGTTTG--------------------------------GTCGGATGTTTGTGTGG
Schizogenius  TCTGTTAATGTGTATGACT-CGTGCATGCCTTTTTCAGTG------------------ACGCGGGTTTG--------------GTCGGATGTTTGTGCGG
Dyschirius    GAACACATTCATCTTCGGG-TGGATGATGGGCATCGGCCGTATGCCG------------------------------------GTCGGAAGTTTGTGTGG
Loricera      ACGTACAACTTGTTGTGCC-TGTATGATGTGTTCTGTGTGCGTTAT--------------------------------------GTTCGGTGGTTCATGG
Calosoma      TGCAGTCGCCGTTACGGCG-GTTGGCTGTGC---------------------------------------------------GGTCCGG-GAGTTCGTGG
Scaphinotus   TGTACCGTGCGTTTTGGCG-TTTGGTCACACTCTCGTTCATTCGCGTATATACATTA-CTACGGGC----------------AAGGCGG-GAGTTCGTGG
Elaphrus      TGTCCGTTACGGCGGCGCA-TTTACGTTGTTACTGGCGTGCGC----------------------------------------GGGCGG-GAGTTCGCGG
Blethisa      TGCGTCCGTTTCGGCGGCG-TTATCGTTGCTGCTGGCGTTTG----------------------------------------GGGTCGG-GAGTTCGCGG
Notiophilus   TGTAGCACGTCTAATGTTG-CATGTGGCATTTTACG------------------------------------------------GTCGG-AAGTTTGTGG
Nebria        TCCTAGCTCGGTTTCGATC-GTCCCTAGGCATTTTGCGGCTTCGTGC------------------------------------GGGCGG-AAGTTTGTGG
Leistus       TGTTCTGGTCGGCTCTGCC-GTCGCGGTCATTTTTCGGCATCGTGC-------------------------------------GGGCGG-AAGTTTGTGG
T. holmbergi  TCATTCTTGCATTTCGGTGTTAAGTTATGTACTTTAGCGTGTTTGTACATTT-CC----------------------------GTTTGTGGAGTTTGTGG
T. gibbsii    TCATGCTTGCATTTCGGTG-TAAGTTATGTATTTTAGCGTGTTTGTACATTT-----------------------------CCATTTGTGGAGTTTGTGG
Tenebrio      ----------------G-----TCCCGGGTTCGCTC-----------------------------------------------GG-TGA-CCGTGCGCGG
Dynastes      ----------------GTCCGGCGTTCTCGTCGCGGC------------------------------------------------------CGTGCGCGG
Xanthopygus   ---------------GGTC-CGGCTTCGGTCGCGAT-------------------------------------------------------CGTGCGCGA
              ============================================================================================******  
Character excluded from all analyses indicated by a = in the line under the matrix; boundary regions indicated by *