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18S rDNA from 40 beetle species

Data matrix used in Maddison, D.R., Baker, M.D., and Ober, K.A. In press.A preliminary phylogenetic analysis of 18S ribosomal DNA of carabid beetles (Coleoptera: Carabidae). Boll. Mus. reg. Sci. nat. Torino.

Sites 1801 through 1900

Calybe        -----------------------------------------------------------------------------------CTCGTTTCTTTACTGCA
Cymindis      -----------------------------------------------------------------------------------TGTTTCCTTTACTGCAC
Amara         -----------------------------------------------------------------------------------TCGTTTCTTTACTGCAT
Agonum        -------------------------------TCATT-----------------------------------------------TCTTTACTGCACATCAT
Discoderus    -----------------------------------------------------------------------------------CTCGTTTCTTTACTGCA
Chlaenius     -----------------------------------------------------------------------------------TTGTTTCTTTACTACAT
Loxandrus     -----------------------------------------------------------------------------------TATTACTTTACTATATA
Pterostichus  -----------------------------------------------------------------------------------TCGTTTCTTTACTGCAC
Galerita      GTTTCTTTTCGCTGCAC---------ATTTTTCAGG-----------------------------------------------GGGTATTTAAATGTGTT
Pseudaptinus  GTTTCTTTTCGCTTCAT--------ATTTTACCAGT-----------------------------------------------AGGTAATTGTTTGAGGT
Pseudomorpha  GTTTCTTTTACTACATTATATCCCTTCTACGGGTATGCAATTCATGTATTTTGGGATAAGATGCTCTCATTCATACTGGAGAGTGGAGTTGTTAATAGCA
Morion        GTTTACT---TT---------------TCAC--TAT--------------------------------------------------TATATACGACTTAA
Psydrus       ----------G---------------GTCTCGTAAC-----------------------------------------------TGGCATATCGTTCCTCT
Diplous       GTAACCTGGCATGTGCGT-GTAAGT----------------------------------------------------------ATGCGCGTATATAGCGT
Patrobus      GTTACCTGTCACTTGTAT-G---------------------------------------------------------------TTGCGCGTTCGTGTGTT
Zolus         GTGCTCCCGG-------------------------------------------------------------------------TCGTGCATATGTTGTAG
Sloaneana     GTTTTCT----------------------------------------------------------------------------GGCCGTGCATTTGTTGT
Diplochaetus  ---------------------------TCGTTT--C------------------------------------------------CTGGCGTACATTTTTG
Pericompsus   G---------------------------TTTTC--T------------------------------------------------GGCATTCATTTGTATG
Bembidion     G--------------------------TCTTCTGGC-----------------------------------------------GTGCTTTTGTTGTGGTG
Asaphidion    G--------------------------TCTCCTGCC-----------------------------------------------TTATCTTAGCTGTGGTG
Trechus       -----------------------------------T------------------------------------------------CGTATTCTGGCGTGCA
Pasimachus    GGTTTACCATATGTTTTTGGTGTATTGTTCTTGGGGAAACTCTTCACATTTTTTCAATGGA----------------------CACTTTATCATCAATTC
Scarites      G---------------------------GTTAA--C------------------------------------------------CTTATTTTGGTGTATT
Clivina       GATTAG-----------------------------------------------------------------------------CCATTCATTGTTATCTA
Schizogenius  --------------------------ATTCGGTTAG-----------------------------------------------CCATTCTTCGTTGTTCA
Dyschirius    GGTATGCCG-----------------T----------------------------------------------------------GTATGCGTGTCGCTT
Loricera      GCTTCATTCGTC--------------A--------------------------------------------------------CGGGCATTTTTCATACA
Calosoma      ---------------------------------------------------------------------------------------TCTCGGTTTCCGT
Scaphinotus   GTTCTCTGTCCGTGAGTGTGTGTGTGCGT------------------------------------------------------TGGGTGTGGCGTTTGGG
Elaphrus      GTACTGCA---------------G-CG--------------------------------------------------------TCGTGTGCTCGTATTTG
Blethisa      GTACTTTC------------------G--------------------------------------------------------GCGTCAAGTGGTTTCGG
Notiophilus   GT---------------------------------------------------------------------------------ATCCGTTGGTGTTATCA
Nebria        GTATCAACC-----------------G--------------------------------------------------------CTCGTTGTTCGTTGGTG
Leistus       GTATCAACC---------------------------------------------------------------------------GGGCGGTGTTCGTCAA
T. holmbergi  TTATCGGT------------------G--------------------------------------------------------TGTGCTGCACGTTATTG
T. gibbsii    TTATTGGTG--------------------------------------------------------------------------TGTGCTGCACGTTCTAA
Tenebrio      ----------G-----------------------------------------------------------------------------------------
Dynastes      ----------G-----------------------------------------------------------------------------------------
Xanthopygus   ----------------------------------------------------------------------------------------------------
              ====================================================================================================
Character excluded from all analyses indicated by a = in the line under the matrix; boundary regions indicated by *